References
The following software packages are used in this pipeline:
Software |
Website |
Citation |
---|---|---|
AWS CLI |
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BCFtools |
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BWA |
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conda |
||
fastp |
||
FastQC |
||
GATK4 |
||
matplotlib |
||
MultiQC |
||
pandas |
||
Python |
||
R |
R Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria, (2022). |
|
SAMtools |
||
Snakemake |
||
Somalier |
||
Tabix |
||
VerifyBamID |